Several mirnamrna relationship databases have been deployed, most of them based on. This database provides a global view of tissue and cellline based. Integrated analysis of microrna and mrna expression gene. The geo2r software already normalized the mirna expression data. My data is from a mirnamicroarray using exiqon 7th gene sliedes and lna thecnology. Rtqpcrbased gene expression profiles are stored in a universal and expandable database scheme and wrapped by an intuitive userfriendly interface. Which is the best database for retrieving mir tissue specific. Users are allowed to customize the algorithm, numerical parameters, and positionspecific. In this section, we introduce databases, software libraries and algorithms. We have merged 3 databases of validated targets and 6 databases of. For this purpose, mirna expression profiling datasets derived from the gene. Intends to identify potential microrna target sites in genomic sequences.
This package features data statistics, multiple mapping levels in a clear graphical interface. Anti correlation between mirna and mrna expression profiles can. The analysis of mirna expression profiling datasets reveals inverse. In the present study, we have developed the mirmine database of mirna expression profiles from publicly available human mirnaseq data. This database stores individual gene expression profiles from curated datasets in the gene expression omnibus geo repository.
Search for specific profiles of interest based on gene annotation or precomputed profile characteristics. In our study, the following taqman microrna assays and controls were used. A software pipeline that can be used for the analysis of mirna deep sequencing data. Major imporvement in this update is the inclusion of deep sequencing data, which became the principal resources on microrna diversity and expression.